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EMBL-EBI: Interactions and pathways - Reactome

           EBI

 

Description

This workshop will give an introduction to the Reactome pathway database website and analysis tools, using short presentations and practical hands-on exercises. The session will also explain where to learn more, get help, and how to become involved in adding more pathway information to Reactome.

Trainers

Steve Jupe, EMBL-EBI

 

Audience and Prerequisites

  • This workshop is aimed at researchers who want to learn about pathways or identify pathways relevant to a set of molecules
  • Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals

 

Syllabus, Tools and Resources

During this course you will learn about:

  • The need for pathway databases such as Reactome
  • Reactome pathways diagrams
  • Navigating the Pathway browser
  • Analysing your own data with Reactome

 

Learning Objectives

After this course you should be able to:

  • Navigate the Reactome Pathway browser, search pathways and understand pathway diagrams
  • Find proteins or compounds represented in Reactome
  • Extend Reactome pathways with protein-protein or protein-compound interactions from relevant databases or with your own interactions data
  • Map your own lists of genes, proteins, or compounds to Reactome pathways and identifying the pathways that are over-represented
  • Visualise pathway expression levels using your own microarray or protein dataset

 

Links

Book Here

Reactome webinar

Reactome quick tour

Reactome: exploring and analysing biological pathways

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