The Ensembl Projectprovides a comprehensive and integrated source of annotation of mainly vertebrate and genome sequences. This 1-day workshop offers participants the possibility of gaining hands-on experience in the use of the Ensembl genome browser but also provides them with the necessary background information.
This course will focus on the vertebrate genomes in Ensembl, however much of what will be covered is also applicable to the non-vertebrates (plants, bacteria, fungi, metazoa and protists) in Ensembl Genomes.
There may be some tools and topics that do not apply to non-vertebrates. If you have any questions about this, please email the Ensembl Outreach Project Leader, Emily Perry.
Denise Carvalho-Silva, EMBL-EBI
Audience and Prerequisites
Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals.
Syllabus, Tools and Resources
During this course you will learn about:
- the data types in Ensembl
- how to view data in the Ensembl browser
- how to mine Ensembl data using BioMart
After this course you should be able to:
- Access and navigate the Ensembl homepage
- Search the Ensembl browser with a gene, location (a region of a genome), or polymorphism of interest
- Understand the different ways the results are presented in Ensembl (including the gene, location, transcript and variation tabs)
- Export Ensembl data quickly and easily with the browser and BioMart
|9:30 - 12:30||Introduction to Ensembl and Ensembl genes|
|Viewing genes and locations in the browser|
|Data-mining with BioMart|
|12:30 - 13:30||Lunch|
|13:30 - 17:30||Genetic variation, comparative genomics or gene regulation, depending on participants' interests|