The Open Microscopy Environment (OME) is an open-source software project that develops tools that enable access, analysis, visualization, sharing and publication of biological image data.
OME has three components:
- OME-TIFF, standardised file format and data model;
- Bio-Formats, a software library for reading proprietary image file formats; and
- OMERO, a software platform for image data management and analysis.
In this one day course, we will present the OMERO platform, and show how Facility Managers can use it to manage users, groups, and their microscopy, HCS and digital pathology data.
Help pages on 'Using OMERO for Facility Managers' can be found here.
This course is organized alongside a one day course on Biological Imaging Data Management for Life Scientists. More information on this event are available here.
This course will be delivered by members of the OMERO team. The OME project is supported by BBSRC and Wellcome Trust.
Colin Blackburn, University of Dundee
Balaji Ramalingam, University of Dundee
Audience and Prerequisites
- Facility Managers using or, wanting to use, OMERO for image data management
- Graduate students, Postdocs and Staff members from the University of Cambridge, Affiliated Institutions and other external Institutions or individuals.
Syllabus, Tools and Resources
During this course you will learn about:
- Group & user management
- Managing & sharing data
- Importing data into OMERO
- Using OMERO with image processing tools: ImageJ, Icy, CellProfiler, Matlab, etc.
- Where to find online training materials
After this course you should be able to:
- Create and manage OMERO users and groups
- Import, manage and share image and HCS data
- Use OMERO with 3rd party applications and plugins to analyse data
- Use OMERO web plugins to organise and publish data
- Gain an awareness of the range of 3rd party applications available
- Introduce OMERO to new users