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Biological data analysis using InterMine

Intermine

 

Description

InterMine is a freely available data warehouse and analysis software system that has been used to create a suite of databases for the analysis of large and complex biological data sets.

InterMine-based data analysis platforms are available for many organisms including mouse, rat, budding yeast, plants, nematodes, fly, zebrafish and more recently human.

The InterMine web interface offers sophisticated query and visualisation tools, as well as comprehensive web services for bioinformaticians. Genomic and proteomic data within InterMine databases includes pathways, gene expression, interactions, sequence variants, GWAS, regulatory data and protein expression.

 

Prerequisites

  • The course is aimed at bench biologists and bioinformaticians who need to analyse their own data against large biological datasets, or who need to search against several biological datasets to gain knowledge of a gene/gene set, biological process or function. 
  • The exercises will mainly use the fly, human and mouse databases, but the course is  applicable to anyone working with data for which an InterMine database is available. See www.intermine.org for a comprehensive list of InterMine databases..

 

For additional information, follow this link.

 

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