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Databases and Services

These courses aim to train participants in the use of specific databases, and associated tools, and on how to search, retrieve, analyse and interpret publicly available data.

The vast majority of such databases are hosted and maintained by the European Bioinformatics Institute and in many cases represent reference databases (e.g. Ensembl, Uniprot) that researchers are likely to use in their daily work to retrieve crucial biological information.

Resources covered include open-source tools for nucleotide and protein sequence alignment, functional genomics, metabolomics, pathway and network analysis.

Title
Biological data analysis using InterMine
COSMIC: Exploring cancer genetics at high resolution
EMBL-EBI: An introduction to EMBL-EBI resources
EMBL-EBI: An introduction to sequence searching
EMBL-EBI: Array Express and Expression Atlas
EMBL-EBI: Bioinformatics resources for exploring disease related data
EMBL-EBI: European Variation Archive
EMBL-EBI: Interactions & Pathways
EMBL-EBI: Introduction to Interpro
EMBL-EBI: Introduction to the ENA Sequence Archive
EMBL-EBI: Network analysis with Cytoscape and PSICQUIC
EMBL-EBI: Ontologies in life sciences - examples from GO and EFO
EMBL-EBI: Protein Sequence Databases with UniProt
Interpreting the clinical genome with DECIPHER
Using the Ensembl Genome browser