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Research Informatics Training

 

Senior Software Engineer

Publications

Key publications: 

The reactome pathway knowledgebase 2022.

Gillespie M, Jassal B, Stephan R, Milacic M, Rothfels K, Senff-Ribeiro A, Griss J, Sevilla C, Matthews L, Gong C, Deng C, Varusai T, Ragueneau E, Haider Y, May B, Shamovsky V, Weiser J, Brunson T, Sanati N, Beckman L, Shao X, Fabregat A, Sidiropoulos K, Murillo J, Viteri G, Cook J, Shorser S, Bader G, Demir E, Sander C, Haw R, Wu G, Stein L, Hermjakob H, D'Eustachio P.

Nucleic Acids Res, 2022

doi:10.1093/nar/gkab1028.


The IntAct database: efficient access to fine-grained molecular interaction data.

Del Toro N, Shrivastava A, Ragueneau E, Meldal B, Combe C, Barrera E, Perfetto L, How K, Ratan P, Shirodkar G, Lu O, Mészáros B, Watkins X, Pundir S, Licata L, Iannuccelli M, Pellegrini M, Martin MJ, Panni S, Duesbury M, Vallet SD, Rappsilber J, Ricard-Blum S, Cesareni G, Salwinski L, Orchard S, Porras P, Panneerselvam K, Hermjakob H.

Nucleic Acids Res, 2022

doi:10.1093/nar/gkab1006.

 

Other publications: 

 

IntAct App: a Cytoscape application for molecular interaction network visualization and analysis

Eliot Ragueneau, Anjali Shrivastava, John H Morris, Noemi del-Toro, Henning Hermjakob, Pablo Porras
Bioinformatics, Volume 37, Issue 20, October 2021, Pages 3684–3685

doi:10.1093/bioinformatics/btab319

Teaching and Supervisions

Teaching: 

 

2023/2024:

  • Network Analysis with Cytoscape - Trainer

2022/2023:

  • Network Analysis with Cytoscape - Trainer

2021/2022:

  • Network Analysis with Cytoscape - Trainer
Eliot Ragueneau

Contact Details

Email address: 
EMBL’s European Bioinformatics Institute (EMBL-EBI)
Wellcome Genome Campus
Hinxton
Cambridgeshire
CB10 1SD
United Kingdom