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Bioinformatics Training

 

Vice President, Head of Application Development at Bruker BioSpin

Biography

An accomplished Research and Technology leader with 18 years of experience setting strategies and delivering innovative molecular data-driven translational solutions, building knowledge bioresources and data analytics platforms. I have extensive practical experience in lab-based IVDR, ISO and GLP, and data GDPR privacy regulatory requirements to ensure compliance standards. With a wide-ranging network across industry, SME, and academia, I have secured funding, coordinated/partnered in four international Horizon EC projects and produced over 125 publications. As a strategic leader, I have established and advanced three globally-used knowledge resources, ensuring FAIR governance compliance, and have developed automated curation solutions using NLP, resulting in a 50% reduction in curation time and enhanced interoperability while doubling data accuracy and quality. My team developed robust AI/ML and biostatistical workflow pipelines for analysing bioresources multi-omics and RWE data using automated IaaS workflows, DevOps, and platform-based techniques. Utilising my team's skills in Knowledge Graphs, on top of bioresources analytics, to establish interpretive tools to improve insight into molecular cancer epidemiology IARC EPIC data resulting in reproducible, data-driven models that generate novel insights. As a goal-oriented leader, I prioritise creating supportive and productive cultures that foster teamwork and clear communication while emphasising operational excellence. I am passionate about leading cross-functional teams in a collaborative and impactful manner to drive innovation and deliver results.

Publications

Key publications: 

 


Behavioural and molecular endophenotypes in psychotic disorders reveal heritable abnormalities in glutamatergic neurotransmission. (PMID:25826115) Scoriels L, Salek RM, Goodby E, Grainger D, Dean AM, West JA, Griffin JL, Suckling J, Nathan PJ, Lennox BR, Murray GK, Bullmore ET, Jones PB. Translational Psychiatry, 2015, 5:e540


Data standards can boost metabolomics research, and if there is a will, there is a way P Rocca-Serra, RM Salek, M Arita, E Correa, S Dayalan, … Metabolomics 12 (1), 1-13


Mass spectral databases for LC/MS and GC/MS-based metabolomics: state of the field and future prospects M Vinaixa, EL Schymanski, S Neumann, M Navarro, RM Salek and O Yanes. TrAC Trends in Analytical Chemistry, 2015


COordination of Standards in MetabOlomicS (COSMOS): facilitating integrated metabolomics data access RM Salek, S Neumann, D Schober, J Hummel, K Billiau… – Metabolomics


Dolphin: a tool for automatic targeted metabolite profiling using 1D and 2D (1)H-NMR data. (PMID:25370160) Gómez J, Brezmes J, Mallol R, Rodríguez MA, Vinaixa M, Salek RM, Correig X, Cañellas N. Analytical and Bioanalytical Chemistry 2014, 406(30):7967-7976


Embedding standards in metabolomics: the Metabolomics Society data standards task group. RM Salek, M Arita, S Dayalan, T Ebbels, AR Jones… – Metabolomics, 2015


Getting the right answers: understanding metabolomics challenges. (PMID:25354566) Beisken S, Eiden M, Salek RM. Expert Review of Molecular Diagnostics, 2015, 15(1):97-109


The mzTab data exchange format: communicating mass-spectrometry-based proteomics and metabolomics experimental results to a wider audience. (PMID:24980485 PMCID:PMC4189001) Griss J, Jones AR, Sachsenberg T, Walzer M, Gatto L, Hartler J, Thallinger GG, Salek RM, … and Xenacios I. Molecular & Cellular Proteomics : MCP, 2014, 13(10):2765-2775


Genome-wide association study of metabolic traits reveals novel gene-metabolite-disease links. (PMID:24586186 PMCID:PMC3930510) Rueedi R, Ledda M, Nicholls AW, Salek RM, Marques-Vidal P, … and Bergman S. PLoS Genetics, 2014, 10(2):e1004132


MetaboLights—an open-access general-purpose repository for metabolomics studies and associated meta-data K Haug, RM Salek, P Conesa, J Hastings, P de Matos, M Rijnbeek, … Nucleic acids research, gks1004

Teaching and Supervisions

Teaching: 

 

2024/2025:

  • Metabolomics data analysis - Training Lead, Trainer

2023/2024:

  • Introduction to Metabolomics - Training Lead, Trainer

2018/2019:

  • An introduction to metabolomics and its application in life-sciences - Trainer

2017/2018:

  • An introduction to metabolomics and its application in life-sciences - Trainer

2016/2017:

  • An introduction to metabolomics and its application in life-sciences - Trainer

2015/2016:

  • An introduction to metabolomics and its application in life-sciences - Trainer

2014/2015:

  • Introduction to Metabolomics 
Reza Salek

Contact Details

Email address: 
Bruker Biospin
Ettlingen
Baden-Württemberg
Germany