Bioinformatics Analyst
Publications
ZFTA-translocations constitute ependymoma chromatin remodeling and transcription factors.
Authors: R Kupp, L Ruff, S Terranova, E Nathan, S Ballereau, R Stark, C Sekhar Reddy...
Research group: Gilbertson Group, Bioinformatics
E-pub date: 1 Sep 2021
Journal name: Cancer Discov
ZAP-70 constitutively regulates gene expression and protein synthesis in chronic lymphocytic leukemia.
Authors: J Chen, V Sathiaseelan, AD Moore, S Tan, CS Chilamakuri, VN Roamio Franklin...
Research group: Bioinformatics
E-pub date: 1 Jul 2021
Journal name: Blood
Non-canonical Hedgehog signaling through L-type voltage gated Ca2+ channels controls CD8+ T cell killing
Authors: J Hanna, C Kapeni, L O’Brien, V Carbonaro, F Beke, C Chilamakuri, M de la...
Research group: de la Roche Group, Bioinformatics
E-pub date: 1 Mar 2021
Journal name:
Synthetic Lethal and Resistance Interactions with BET Bromodomain Inhibitors in Triple-Negative Breast Cancer.
Authors: S Shu, H-J Wu, JY Ge, R Zeid, IS Harris, B Jovanović, K Murphy, B Wang, X ...
Research group: Carroll Group, Bioinformatics
E-pub date: 18 Jun 2020
Journal name: Mol Cell
AZD4573 Is a Highly Selective CDK9 Inhibitor That Suppresses MCL-1 and Induces Apoptosis in Hematologic Cancer Cells.
Authors: J Cidado, S Boiko, T Proia, D Ferguson, SW Criscione, M San Martin, P Pop-D...
Research group: Bioinformatics
E-pub date: 15 Feb 2020
Journal name: Clin Cancer Res
EN1 is a transcriptional dependency in triple-negative breast cancer associated with brain metastasis.
Authors: G Peluffo, A Subedee, NW Harper, N Kingston, B Jovanović, F Flores, LE Ste...
Research group: Caldas Group, Bioinformatics
E-pub date: 15 Aug 2019
Journal name: Cancer Res
Phospho-regulation of ATOH1 Is Required for Plasticity of Secretory Progenitors and Tissue Regeneration.
Authors: G Tomic, E Morrissey, S Kozar, S Ben-Moshe, A Hoyle, R Azzarelli, R Kemp, C...
Research group: Winton Group, Bioinformatics
E-pub date: 6 Sep 2018
Journal name: Cell Stem Cell
A quantitative mass spectrometry-based approach to monitor the dynamics of endogenous chromatin-associated protein complexes.
Authors: EK Papachristou, K Kishore, AN Holding, K Harvey, TI Roumeliotis, CSR Chila...
Research group: Markowetz Group, Carroll Group, Bioinformatics
E-pub date: 13 Jun 2018
Journal name: Nat Commun
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes.
Authors: I de Santiago, W Liu, K Yuan, M O'Reilly, CSR Chilamakuri, BAJ Ponder, KB M...
Research group: Ponder Group, Markowetz Group, Bioinformatics
E-pub date: 24 Feb 2017
Journal name: Genome Biol
Teaching and Supervisions
2024/2025:
- Introduction to Python for Biologists - Training Lead, Trainer
- Single-cell RNA-seq Analysis - Training Lead, Trainer
2023/2024:
- Introduction to Python for Biologists - Training Lead, Trainer
- High Performance Computing: An Introduction: Training Lead, Trainer
- Introduction to Metagenomics - Trainer
- Analysis of Single-cell RNA-seq Data - Training Lead, Trainer
2022/2023:
- Reproducible Research in R - Trainer
- Introduction to Unix and bash - Training Lead, Trainer
- Analysis of Bulk RNA-seq Data - Training Lead, Trainer
- Analysis of Single-cell RNA-seq Data - Training Lead, Trainer
- Experimental Design - Training Lead, Trainer
- High Performance Computing: An Introduction: Training Lead, Trainer
2021/2022:
- High Performance Computing: An Introduction - Training Lead, Trainer
- Analysis of bulk RNA-seq data - Training Lead, Trainer
- Analysis of single cell RNA-seq data - Training Lead, Trainer
- Experimental Design - Training Lead, Trainer
- Introduction to R - Training Lead, Trainer
2020/2021:
- An Introduction to Solving Biological Problems with Python - Trainer
- Experimental Design - Training Lead, Trainer
- Analysis of bulk RNA-seq data - Training Lead, Trainer
- Introduction to Command Line Linux - Training Lead, Trainer
- An Introduction to Machine Learning - Training Lead, Trainer
- Introduction to R - Training Lead, Trainer
- Introduction to Python - Training Lead, Trainer
2019/2020:
- Data Science in Python - Training Lead, Trainer
- Data Carpentry in R - Training Lead, Trainer
- Introduction to R - Training Lead, Trainer
- Analysis of bulk RNA-seq data - Training Lead, Trainer
- Introduction to Python - Training Lead, Trainer
- Experimental Design - Training Lead, Trainer
2018/2019:
- Data Manipulation and Visualisation in R - Training Lead, Trainer
- An Introduction to Solving Biological Problems with R - Training Lead, Trainer
- Experimental Design - Training Lead, Trainer
2017/2018:
- An Introduction to Solving Biological Problems with R - Training Lead, Trainer
- Experimental Design - Training Lead, Trainer
2016/2017:
- Experimental Design - Training Lead, Trainer
- An Introduction to Solving Biological Problems with R - Training Lead, Trainer
